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ep1 genotyping platform  (fluidigm)


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    Structured Review

    fluidigm ep1 genotyping platform
    Ep1 Genotyping Platform, supplied by fluidigm, used in various techniques. Bioz Stars score: 96/100, based on 528 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ep1+genotyping+platform/EP1/10__1016_slash_j__aquaculture__2026__743687-69-8-6
    Average 96 stars, based on 528 article reviews
    ep1 genotyping platform - by Bioz Stars, 2026-10
    96/100 stars

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    Related Articles

    other:

    Article Title: Development of single-nucleotide polymorphism markers for Bromus tectorum (Poaceae) from a partially sequenced transcriptome
    Article Snippet: Ninety-five SNP assays were developed for use on 96.96 arrays with the Fluidigm EP1 genotyping platform.

    Amplification:

    Article Title: Hatchery lobster releases risk genetic bottlenecking via survival skews with maternal effects
    Article Snippet: Increased survivability among cultured individuals is a core tenet of hatchery-based fisheries enhancement, but frequently results in released juvenile cohorts showing lower genetic diversity than natural equivalents.. This effect is exacerbated where certain sibling cohorts dominate survival within communal culture, and a failure to manage ensuing impacts has resulted in severe losses of genetic diversity in wild stocks undergoing hatchery enhancement, undermining sustainability goals.. Hatcheries supporting European lobster fisheries are growing in number, despite lacking knowledge of the impact of released juveniles upon the genetic diversity of targeted populations.

    Isolation:

    Article Title: Temporal Variation in Genetic Composition of Migratory Helicoverpa Zea in Peripheral Populations
    Article Snippet: SNPs were verified by mapping a portion of the original Illumina sequence reads used to generate the genome assembly [ ] and 384 computationally verified SNPs were manually selected to cover 384 longest scaffolds. .. Primers developed for SNP containing sequences were used to verify the ability to amplify loci from genomic DNA isolated from a laboratory colony insect and 96 validated SNPs were selected to synthesize reagents for SNP genotyping on a Fluidigm EP1 genotyping platform (Fluidigm Corporation, San Francisco, CA, USA). .. DNA extracts from field collected samples were quantified using a Qbit Flex fluorometer and Quanti-iT PicoGreen assay kit (Thermofisher Scientific, Waltham, MA, USA) for double stranded DNA and adjusted to 60 ng/μl prior to SNP genotyping with the Fluidigm EP1 system using integrated fluidic circuits (IFCs) that can analyze 96 samples with 96 SNP markers.



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    fluidigm genotyping platform fluidigm ep1 tm juno system
    Scatter plots showing genotype calls for the single-nucleotide polymorphism (SNP) assay sets P002, P101, and P118 from the Fluidigm <t>EP1</t> TM assay. Colored dots indicate SNP marker genotypes of the 280 cucumber accessions ( A ) and 95 commercial F1 hybrid cultivars ( B ). Red, blue, and green dots indicate XX (homozygote), YY (homozygote), and XY (heterozygote) genotypes, respectively. Gray and black dots indicate no call and no template control (NTC), respectively.
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    fluidigm ep1 fluidigm genotyping platform
    Scatter plots showing genotype calls for the single-nucleotide polymorphism (SNP) assay sets P002, P101, and P118 from the Fluidigm <t>EP1</t> TM assay. Colored dots indicate SNP marker genotypes of the 280 cucumber accessions ( A ) and 95 commercial F1 hybrid cultivars ( B ). Red, blue, and green dots indicate XX (homozygote), YY (homozygote), and XY (heterozygote) genotypes, respectively. Gray and black dots indicate no call and no template control (NTC), respectively.
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    Image Search Results


    Scatter plots showing genotype calls for the single-nucleotide polymorphism (SNP) assay sets P002, P101, and P118 from the Fluidigm EP1 TM assay. Colored dots indicate SNP marker genotypes of the 280 cucumber accessions ( A ) and 95 commercial F1 hybrid cultivars ( B ). Red, blue, and green dots indicate XX (homozygote), YY (homozygote), and XY (heterozygote) genotypes, respectively. Gray and black dots indicate no call and no template control (NTC), respectively.

    Journal: Plants

    Article Title: Genetic Diversity Assessment and Cultivar Identification of Cucumber ( Cucumis sativus L.) Using the Fluidigm Single Nucleotide Polymorphism Assay

    doi: 10.3390/plants10020395

    Figure Lengend Snippet: Scatter plots showing genotype calls for the single-nucleotide polymorphism (SNP) assay sets P002, P101, and P118 from the Fluidigm EP1 TM assay. Colored dots indicate SNP marker genotypes of the 280 cucumber accessions ( A ) and 95 commercial F1 hybrid cultivars ( B ). Red, blue, and green dots indicate XX (homozygote), YY (homozygote), and XY (heterozygote) genotypes, respectively. Gray and black dots indicate no call and no template control (NTC), respectively.

    Article Snippet: Fluidigm assay was performed according to the manufacturer’s protocol using the genotyping platform Fluidigm EP1 TM Juno System (Fluidigm Corp, South San Francisco, CA, USA).

    Techniques: Marker, Control